2 * divsufsort.h for libdivsufsort-lite
3 * Copyright (c) 2003-2008 Yuta Mori All Rights Reserved.
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11 * Software is furnished to do so, subject to the following
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28 #define _DIVSUFSORT_H 1
32 #endif /* __cplusplus */
38 * Constructs the suffix array of a given string.
39 * @param T [0..n-1] The input string.
40 * @param SA [0..n-1] The output array of suffixes.
41 * @param n The length of the given string.
42 * @param openMP enables OpenMP optimization.
43 * @return 0 if no error occurred, -1 or -2 otherwise.
46 divsufsort(const unsigned char *T, int *SA, int n, int openMP);
49 * Constructs the burrows-wheeler transformed string of a given string.
50 * @param T [0..n-1] The input string.
51 * @param U [0..n-1] The output string. (can be T)
52 * @param A [0..n-1] The temporary array. (can be NULL)
53 * @param n The length of the given string.
54 * @param num_indexes The length of secondary indexes array. (can be NULL)
55 * @param indexes The secondary indexes array. (can be NULL)
56 * @param openMP enables OpenMP optimization.
57 * @return The primary index if no error occurred, -1 or -2 otherwise.
60 divbwt(const unsigned char *T, unsigned char *U, int *A, int n, unsigned char * num_indexes, int * indexes, int openMP);
65 #endif /* __cplusplus */
67 #endif /* _DIVSUFSORT_H */